Получает ли efetch () Bio.Entrez все метаданные статьи PubMed?

Интересно, есть ли у Bio.Entrez 's efetch() извлекает все метаданные статьи PubMed, используя PMID в качестве входных данных. Под всеми метаданными я имею в виду, имеет ли PubMed больше метаданных, чем что efetch() извлекает.

Например, я вижу, что для PMID 23954024, efetch() извлекает реферат, который содержит немного меньше информации, чем реферат на веб-сайте PubMed ( http://www.ncbi.nlm.nih.gov/pubmed/23954024):

efetch():

"AbstractText": [
    "Rotator cuff tendinopathy is a common source of shoulder pain characterised by persistent and/or recurrent problems for a proportion of sufferers. The aim of this study was to pilot the methods proposed to conduct a substantive study to evaluate the effectiveness of a self-managed loaded exercise programme versus usual physiotherapy treatment for rotator cuff tendinopathy.", 
    "A single-centre pragmatic unblinded parallel group pilot randomised controlled trial.", 
    "One private physiotherapy clinic, northern England.", 
    "Twenty-four participants with rotator cuff tendinopathy.", 
    "The intervention was a programme of self-managed loaded exercise. The control group received usual physiotherapy treatment.", 
    "Baseline assessment comprised the Shoulder Pain and Disability Index (SPADI) and the Short-Form 36, repeated three months post randomisation.", 
    "The recruitment target was met and the majority of participants (98%) were willing to be randomised. 100% retention was attained with all participants completing the SPADI at three months. Exercise adherence rates were excellent (90%). The mean change in SPADI score was -23.7 (95% CI -14.4 to -33.3) points for the self-managed exercise group and -19.0 (95% CI -6.0 to -31.9) points for the usual physiotherapy treatment group. The difference in three month SPADI scores was 0.1 (95% CI -16.6 to 16.9) points in favour of the usual physiotherapy treatment group.", 
    "In keeping with previous research which indicates the need for further evaluation of self-managed loaded exercise for rotator cuff tendinopathy, these methods and the preliminary evaluation of outcome offer a foundation and stimulus to conduct a substantive study."
],

http://www.ncbi.nlm.nih.gov/pubmed/23954024: Аннотация ЦЕЛИ: Тининопатия ротаторной манжеты является распространенным источником боли в плече, для которой характерны постоянные и / или рецидивирующие проблемы у части пациентов. Цель этого исследования состояла в том, чтобы опробовать методы, предложенные для проведения предметного исследования, для оценки эффективности программы нагрузок с самостоятельным управлением нагрузкой по сравнению с обычным физиотерапевтическим лечением тендинопатии вращающей манжеты.

DESIGN:
A single-centre pragmatic unblinded parallel group pilot randomised controlled trial.

SETTING:
One private physiotherapy clinic, northern England.

PARTICIPANTS:
Twenty-four participants with rotator cuff tendinopathy.

INTERVENTIONS:
The intervention was a programme of self-managed loaded exercise. The control group received usual physiotherapy treatment.

MAIN OUTCOMES:
Baseline assessment comprised the Shoulder Pain and Disability Index (SPADI) and the Short-Form 36, repeated three months post randomisation.

RESULTS:
The recruitment target was met and the majority of participants (98%) were willing to be randomised. 100% retention was attained with all participants completing the SPADI at three months. Exercise adherence rates were excellent (90%). The mean change in SPADI score was -23.7 (95% CI -14.4 to -33.3) points for the self-managed exercise group and -19.0 (95% CI -6.0 to -31.9) points for the usual physiotherapy treatment group. The difference in three month SPADI scores was 0.1 (95% CI -16.6 to 16.9) points in favour of the usual physiotherapy treatment group.

CONCLUSIONS:
In keeping with previous research which indicates the need for further evaluation of self-managed loaded exercise for rotator cuff tendinopathy, these methods and the preliminary evaluation of outcome offer a foundation and stimulus to conduct a substantive study.

(OBJECTIVES, DESIGN, SETTING и т. д. отсутствуют efetch() аннотация.)

Какие другие метаданные делают efetch() отсутствует, и есть ли способ программно получить недостающую информацию?

Источник

2 ответа

Решение

Информация не пропущена:

from Bio import Entrez
Entrez.email = "sample@sample.org"

handle = Entrez.efetch(db="pubmed", id="23954024", rettype="xml")

print(handle.read())

Часть вывода:

<Abstract>
 <AbstractText Label="OBJECTIVES" NlmCategory="OBJECTIVE">Rotator cuff tendinopathy is a common source of shoulder pain characterised by persistent and/or recurrent problems for a proportion of sufferers. The aim of this study was to pilot the methods proposed to conduct a substantive study to evaluate the effectiveness of a self-managed loaded exercise programme versus usual physiotherapy treatment for rotator cuff tendinopathy.</AbstractText>
 <AbstractText Label="DESIGN" NlmCategory="METHODS">A single-centre pragmatic unblinded parallel group pilot randomised controlled trial.</AbstractText>
 <AbstractText Label="SETTING" NlmCategory="METHODS">One private physiotherapy clinic, northern England.</AbstractText>
[...]
Источник

Чтобы расширить ответ xbello, нет, информация не пропущена, но немного скрыта.

from Bio import Entrez

Entrez.email = "Your.Name.Here@example.org"
handle = Entrez.efetch(db="pubmed", id="23954024", rettype="xml")
records = Entrez.read(handle)

for record in records:

    m = record['MedlineCitation']['Article']['Abstract']['AbstractText']
    for subsection in m:
        print(subsection.attributes['Label'])
        print(subsection)

Усеченный вывод:

ЦЕЛИ

Тининопатия ротаторной манжеты является распространенным источником боли в плече, характеризующейся постоянными и / или рецидивирующими проблемами у части пациентов. Цель этого исследования состояла в том, чтобы опробовать методы, предложенные для проведения предметного исследования, для оценки эффективности программы нагрузок с самостоятельным управлением нагрузкой по сравнению с обычным физиотерапевтическим лечением тендинопатии ротаторной манжеты.

ДИЗАЙН

Одноцентровое прагматическое неслепое пилотное параллельное групповое рандомизированное контролируемое исследование.

Источник
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